Fields of Research
Peptide chemistry
Protein post-translational modifications
Chromatin structure and function
Regulation of the tumor suppressor protein p53
Biomolecular condensation
Research Summary
The Chatterjee lab studies the regulation of human chromatin structure and function by post-translational modifications of core histone proteins and the tumor suppressor protein p53. Trainees in the lab gain expertise in developing and applying novel chemical and biochemical tools to elucidate the effects of methylation, acetylation, ubiquitylation and sumoylation on gene transcription by RNA polymerase II, and to study the biochemical relationships, or crosstalk, between these modifications in histones and p53.
Research Statement
Reversible enzymatic modifications of protein side-chains, also known as post-translational modifications or PTMs, confer complexity to biological systems by dynamically regulating the location, structure, and activity of proteomes. Elucidating the mechanistic contributions of post-translationally modified proteins to key cellular processes, such as gene transcription, is critical for understanding normal human development and to identify new therapeutic targets in diseases arising from the misregulation of PTMs. To accomplish these goals, we are applying a seamless combination of chemical and molecular biological tools to investigate uniformly modified proteins in well-defined biophysical and biochemical systems. This enables us to elucidate the structure, function, and regulation of two important families of nuclear proteins – histones and transcription factors – that are implicated in cancers of the skin, breasts, lungs and brain.
Awards and Honors
NIGMS R35
Chemical Strategies To Investigate Biochemical Crosstalk In Human Chromatin
Champak Chatterjee
Professor
Affiliations
UW Department of Chemistry
UW Department of Pharmacology
UW Molecular Engineering and Sciences Institute
UW Biological Physics Structure & Design Program
UW Molecular Biophysics Training Program
American Peptide Society
European Peptide Society
Champak Chatterjee
Professor
Affiliations
UW Department of Chemistry
UW Department of Pharmacology
UW Molecular Engineering and Sciences Institute
UW Biological Physics Structure & Design Program
UW Molecular Biophysics Training Program
American Peptide Society
European Peptide Society
Champak Chatterjee
Professor
Affiliations
UW Department of Chemistry
UW Department of Pharmacology
UW Molecular Engineering and Sciences Institute
UW Biological Physics Structure & Design Program
UW Molecular Biophysics Training Program
American Peptide Society
European Peptide Society
Champak Chatterjee
Professor
Affiliations
UW Department of Chemistry
UW Department of Pharmacology
UW Molecular Engineering and Sciences Institute
UW Biological Physics Structure & Design Program
UW Molecular Biophysics Training Program
American Peptide Society
European Peptide Society
Champak Chatterjee
Professor
Affiliations
UW Department of Chemistry
UW Department of Pharmacology
UW Molecular Engineering and Sciences Institute
UW Biological Physics Structure & Design Program
UW Molecular Biophysics Training Program
American Peptide Society
European Peptide Society
Select Publications
Singh, S.K.; Reyna, A.; Xie, X.; Mao, H.; Ji, M.; Zheng, N.; Hsu, P.L.; Chatterjee, C. Total chemical synthesis of sumoylated histone H4 reveals negative biochemical crosstalk with histone ubiquitylation. Chem. Commun. 2023, 59, 4063–4066.
Leonen, C.J.A..; Shimada, M.; Weller, C.E.; Nakadai, T.; Hsu, P.L.; Tyson, E.L.; Mishra, A.; Shelton, P.M.M.; Sadilek, M.; Hawkins, R.D.; Zheng, N.; Roeder, R.G.; Chatterjee, C. Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts. Elife 2021, 10:e67952.
Witus, S.R.; Burrell, A. L.; Farrell, D. P.; Kang, J.; Wang, M.; Hansen, J.M.; Pravat, A.; Tuttle, L.M.; Brzovic, P.S.; Chatterjee, C.; Zhao, W.; DiMaio, F.; Kollman, J.M.; Klevit, R.E. BRCA1/BARD1 site-specific ubiquitylation of nucleosomal H2A is directed by BARD1. Nat. Struct. Mol. Biol. 2020, 28, 268–277.
Hsu, P. L.; Shi, H.; Leonen, C.; Kang, J.; Chatterjee, C.; Zheng, N. Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS. Mol. Cell 2019, 76, 712–723.
Publications
Champak Chatterjee
Professor
Affiliations
UW Department of Chemistry
UW Department of Pharmacology
UW Molecular Engineering and Sciences Institute
UW Biological Physics Structure & Design Program
UW Molecular Biophysics Training Program
American Peptide Society
European Peptide Society